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Cluster: Rep_3366_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3366_c_3 Rep_3366_c_3_32 37265 38560 + 2.A.1.24.4
TF Rep_3366_c_3 Rep_3366_c_3_33 38655 39506 - HTH_AraC
TC Rep_3366_c_3 Rep_3366_c_3_34 39618 40691 + 1.A.35.3.2
pfam Rep_3366_c_3 Rep_3366_c_3_35 40755 42662 - Sulfatase
CAZyme Rep_3366_c_3 Rep_3366_c_3_36 42931 44484 - GH39
TC Rep_3366_c_3 Rep_3366_c_3_37 44533 45423 - 3.A.1.1.29
TC Rep_3366_c_3 Rep_3366_c_3_38 45437 46378 - 3.A.1.1.29
Gene ID: Rep_3366_c_3_32
Type: TC
Location: 37265 - 38560 (+)
Gene ID: Rep_3366_c_3_33
Type: TF
Location: 38655 - 39506 (-)
Gene ID: Rep_3366_c_3_34
Type: TC
Location: 39618 - 40691 (+)
Gene ID: Rep_3366_c_3_35
Type: pfam
Location: 40755 - 42662 (-)
Gene ID: Rep_3366_c_3_36
Type: CAZyme
Location: 42931 - 44484 (-)
Gene ID: Rep_3366_c_3_37
Type: TC
Location: 44533 - 45423 (-)
Gene ID: Rep_3366_c_3_38
Type: TC
Location: 45437 - 46378 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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