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Cluster: Rep_3366_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3366_c_2 Rep_3366_c_2_4 3620 5038 + GH32
CAZyme Rep_3366_c_2 Rep_3366_c_2_5 5095 6522 + GH32
TC Rep_3366_c_2 Rep_3366_c_2_6 6590 7516 + 3.A.1.1.10
TC Rep_3366_c_2 Rep_3366_c_2_7 7533 8441 + 3.A.1.1.10
STP Rep_3366_c_2 Rep_3366_c_2_8 8482 10308 + SBP_bac_1
NULL(UNKNOWN) Rep_3366_c_2 Rep_3366_c_2_9 10862 12145 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3366_c_2 Rep_3366_c_2_10 12142 12999 + 3.A.1.1.7
TC Rep_3366_c_2 Rep_3366_c_2_11 13002 13784 + 3.A.1.1.34
Gene ID: Rep_3366_c_2_4
Type: CAZyme
Location: 3620 - 5038 (+)
Gene ID: Rep_3366_c_2_5
Type: CAZyme
Location: 5095 - 6522 (+)
Gene ID: Rep_3366_c_2_6
Type: TC
Location: 6590 - 7516 (+)
Gene ID: Rep_3366_c_2_7
Type: TC
Location: 7533 - 8441 (+)
Gene ID: Rep_3366_c_2_8
Type: STP
Location: 8482 - 10308 (+)
Gene ID: Rep_3366_c_2_9
Type:
Location: 10862 - 12145 (+)
Gene ID: Rep_3366_c_2_10
Type: TC
Location: 12142 - 12999 (+)
Gene ID: Rep_3366_c_2_11
Type: TC
Location: 13002 - 13784 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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