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Cluster: Rep_3363_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3363_c_1 Rep_3363_c_1_93 92052 93842 - 9.B.33.1.1
TF Rep_3363_c_1 Rep_3363_c_1_94 93939 95453 - HTH_AraC
STP Rep_3363_c_1 Rep_3363_c_1_95 95696 97000 + SBP_bac_1
TC Rep_3363_c_1 Rep_3363_c_1_96 97075 98031 + 3.A.1.1.34
TC Rep_3363_c_1 Rep_3363_c_1_97 98035 98856 + 3.A.1.1.34
TC Rep_3363_c_1 Rep_3363_c_1_98 98897 99868 + 8.A.5.1.4
CAZyme Rep_3363_c_1 Rep_3363_c_1_99 100408 103284 - CBM67 | GH78
TF Rep_3363_c_1 Rep_3363_c_1_100 103281 104825 - HTH_AraC
TC Rep_3363_c_1 Rep_3363_c_1_101 104825 106600 - 9.B.33.1.1
TC Rep_3363_c_1 Rep_3363_c_1_102 106685 107506 - 3.A.1.1.42
TC Rep_3363_c_1 Rep_3363_c_1_103 107503 108363 - 3.A.1.1.42
Gene ID: Rep_3363_c_1_93
Type: TC
Location: 92052 - 93842 (-)
Gene ID: Rep_3363_c_1_94
Type: TF
Location: 93939 - 95453 (-)
Gene ID: Rep_3363_c_1_95
Type: STP
Location: 95696 - 97000 (+)
Gene ID: Rep_3363_c_1_96
Type: TC
Location: 97075 - 98031 (+)
Gene ID: Rep_3363_c_1_97
Type: TC
Location: 98035 - 98856 (+)
Gene ID: Rep_3363_c_1_98
Type: TC
Location: 98897 - 99868 (+)
Gene ID: Rep_3363_c_1_99
Type: CAZyme
Location: 100408 - 103284 (-)
Gene ID: Rep_3363_c_1_100
Type: TF
Location: 103281 - 104825 (-)
Gene ID: Rep_3363_c_1_101
Type: TC
Location: 104825 - 106600 (-)
Gene ID: Rep_3363_c_1_102
Type: TC
Location: 106685 - 107506 (-)
Gene ID: Rep_3363_c_1_103
Type: TC
Location: 107503 - 108363 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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