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Cluster: Rep_3363_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3363_c_33 Rep_3363_c_33_1 3 1445 - GH127
STP Rep_3363_c_33 Rep_3363_c_33_2 1530 3140 - SBP_bac_1
TC Rep_3363_c_33 Rep_3363_c_33_3 3172 4050 - 3.A.1.1.29
TC Rep_3363_c_33 Rep_3363_c_33_4 4044 4985 - 3.A.1.1.10
CAZyme Rep_3363_c_33 Rep_3363_c_33_5 5653 8703 + GH127
TF Rep_3363_c_33 Rep_3363_c_33_6 8690 9484 - HTH_AraC | HTH_AraC
CAZyme Rep_3363_c_33 Rep_3363_c_33_7 9602 11119 + CBM35 | CBM35
CAZyme Rep_3363_c_33 Rep_3363_c_33_8 11181 15731 + CBM35
CAZyme Rep_3363_c_33 Rep_3363_c_33_9 15805 18372 + GH2
pfam Rep_3363_c_33 Rep_3363_c_33_10 18535 19410 + AP_endonuc_2
pfam Rep_3363_c_33 Rep_3363_c_33_11 19425 20855 + Fucose_iso_C | Fucose_iso_N1 | Fucose_iso_N2
CAZyme Rep_3363_c_33 Rep_3363_c_33_12 21410 22573 + CE9
Gene ID: Rep_3363_c_33_1
Type: CAZyme
Location: 3 - 1445 (-)
Gene ID: Rep_3363_c_33_2
Type: STP
Location: 1530 - 3140 (-)
Gene ID: Rep_3363_c_33_3
Type: TC
Location: 3172 - 4050 (-)
Gene ID: Rep_3363_c_33_4
Type: TC
Location: 4044 - 4985 (-)
Gene ID: Rep_3363_c_33_5
Type: CAZyme
Location: 5653 - 8703 (+)
Gene ID: Rep_3363_c_33_6
Type: TF
Location: 8690 - 9484 (-)
Gene ID: Rep_3363_c_33_7
Type: CAZyme
Location: 9602 - 11119 (+)
Gene ID: Rep_3363_c_33_8
Type: CAZyme
Location: 11181 - 15731 (+)
Gene ID: Rep_3363_c_33_9
Type: CAZyme
Location: 15805 - 18372 (+)
Gene ID: Rep_3363_c_33_10
Type: pfam
Location: 18535 - 19410 (+)
Gene ID: Rep_3363_c_33_11
Type: pfam
Location: 19425 - 20855 (+)
Gene ID: Rep_3363_c_33_12
Type: CAZyme
Location: 21410 - 22573 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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