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Cluster: Rep_3363_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3363_c_32 Rep_3363_c_32_17 15779 16456 + 3.A.1.8.2
TC Rep_3363_c_32 Rep_3363_c_32_18 16470 17522 + 3.A.1.10.3
TC Rep_3363_c_32 Rep_3363_c_32_19 17647 18186 + 5.A.3.3.2
STP Rep_3363_c_32 Rep_3363_c_32_20 18179 19360 + Pyr_redox_2
TC Rep_3363_c_32 Rep_3363_c_32_21 19357 22164 + 5.A.3.3.2
NULL(UNKNOWN) Rep_3363_c_32 Rep_3363_c_32_22 22741 22851 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3363_c_32 Rep_3363_c_32_23 23164 24003 - 3.A.1.1.28
TC Rep_3363_c_32 Rep_3363_c_32_24 24000 24884 - 3.A.1.1.28
STP Rep_3363_c_32 Rep_3363_c_32_25 24923 26266 - SBP_bac_1
CAZyme Rep_3363_c_32 Rep_3363_c_32_26 26339 27418 - GH172
Gene ID: Rep_3363_c_32_17
Type: TC
Location: 15779 - 16456 (+)
Gene ID: Rep_3363_c_32_18
Type: TC
Location: 16470 - 17522 (+)
Gene ID: Rep_3363_c_32_19
Type: TC
Location: 17647 - 18186 (+)
Gene ID: Rep_3363_c_32_20
Type: STP
Location: 18179 - 19360 (+)
Gene ID: Rep_3363_c_32_21
Type: TC
Location: 19357 - 22164 (+)
Gene ID: Rep_3363_c_32_22
Type:
Location: 22741 - 22851 (-)
Gene ID: Rep_3363_c_32_23
Type: TC
Location: 23164 - 24003 (-)
Gene ID: Rep_3363_c_32_24
Type: TC
Location: 24000 - 24884 (-)
Gene ID: Rep_3363_c_32_25
Type: STP
Location: 24923 - 26266 (-)
Gene ID: Rep_3363_c_32_26
Type: CAZyme
Location: 26339 - 27418 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3363_c_32_17 vegetarian > vegan 2.46686 0.01882

🧭 Explore Read Mapping of CGC

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