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Cluster: Rep_3363_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3363_c_28 Rep_3363_c_28_16 17432 19165 + 8.A.59.2.1
TF Rep_3363_c_28 Rep_3363_c_28_17 19159 20262 + HTH_AraC
CAZyme Rep_3363_c_28 Rep_3363_c_28_18 20391 22406 - GH120
pfam Rep_3363_c_28 Rep_3363_c_28_19 22600 23643 - ADH_zinc_N | ADH_N | ADH_zinc_N_2 | Glu_dehyd_C
NULL(UNKNOWN) Rep_3363_c_28 Rep_3363_c_28_20 23847 26168 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3363_c_28 Rep_3363_c_28_21 26350 27339 - GH179
TC Rep_3363_c_28 Rep_3363_c_28_22 27416 28264 - 3.A.1.1.34
TC Rep_3363_c_28 Rep_3363_c_28_23 28290 29195 - 3.A.1.1.11
STP Rep_3363_c_28 Rep_3363_c_28_24 29268 30608 - SBP_bac_1
NULL(UNKNOWN) Rep_3363_c_28 Rep_3363_c_28_25 30688 31695 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3363_c_28 Rep_3363_c_28_26 31733 33013 - GH4
Gene ID: Rep_3363_c_28_16
Type: TC
Location: 17432 - 19165 (+)
Gene ID: Rep_3363_c_28_17
Type: TF
Location: 19159 - 20262 (+)
Gene ID: Rep_3363_c_28_18
Type: CAZyme
Location: 20391 - 22406 (-)
Gene ID: Rep_3363_c_28_19
Type: pfam
Location: 22600 - 23643 (-)
Gene ID: Rep_3363_c_28_20
Type:
Location: 23847 - 26168 (-)
Gene ID: Rep_3363_c_28_21
Type: CAZyme
Location: 26350 - 27339 (-)
Gene ID: Rep_3363_c_28_22
Type: TC
Location: 27416 - 28264 (-)
Gene ID: Rep_3363_c_28_23
Type: TC
Location: 28290 - 29195 (-)
Gene ID: Rep_3363_c_28_24
Type: STP
Location: 29268 - 30608 (-)
Gene ID: Rep_3363_c_28_25
Type:
Location: 30688 - 31695 (-)
Gene ID: Rep_3363_c_28_26
Type: CAZyme
Location: 31733 - 33013 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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