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Cluster: Rep_3363_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3363_c_23 Rep_3363_c_23_6 7085 8824 + 3.A.1.135.5
TC Rep_3363_c_23 Rep_3363_c_23_7 8821 10563 + 3.A.1.135.5
TC Rep_3363_c_23 Rep_3363_c_23_8 10637 12028 + 2.A.25.1.9
pfam Rep_3363_c_23 Rep_3363_c_23_9 12058 13170 - LPG_synthase_TM
CAZyme Rep_3363_c_23 Rep_3363_c_23_10 13183 14160 - GT2
CAZyme Rep_3363_c_23 Rep_3363_c_23_11 14153 15145 - GT2
TC Rep_3363_c_23 Rep_3363_c_23_12 15185 16228 - 4.D.2.1.7
CAZyme Rep_3363_c_23 Rep_3363_c_23_13 16389 17549 - GT28
pfam Rep_3363_c_23 Rep_3363_c_23_14 17574 18419 - ABC2_membrane_2
TC Rep_3363_c_23 Rep_3363_c_23_15 18412 19317 - 3.A.1.126.1
Gene ID: Rep_3363_c_23_6
Type: TC
Location: 7085 - 8824 (+)
Gene ID: Rep_3363_c_23_7
Type: TC
Location: 8821 - 10563 (+)
Gene ID: Rep_3363_c_23_8
Type: TC
Location: 10637 - 12028 (+)
Gene ID: Rep_3363_c_23_9
Type: pfam
Location: 12058 - 13170 (-)
Gene ID: Rep_3363_c_23_10
Type: CAZyme
Location: 13183 - 14160 (-)
Gene ID: Rep_3363_c_23_11
Type: CAZyme
Location: 14153 - 15145 (-)
Gene ID: Rep_3363_c_23_12
Type: TC
Location: 15185 - 16228 (-)
Gene ID: Rep_3363_c_23_13
Type: CAZyme
Location: 16389 - 17549 (-)
Gene ID: Rep_3363_c_23_14
Type: pfam
Location: 17574 - 18419 (-)
Gene ID: Rep_3363_c_23_15
Type: TC
Location: 18412 - 19317 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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