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Cluster: Rep_3362_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3362_c_15 Rep_3362_c_15_15 10847 12289 - GH32
TF Rep_3362_c_15 Rep_3362_c_15_16 12363 13349 - LacI
TC Rep_3362_c_15 Rep_3362_c_15_17 13417 14787 - 4.A.1.2.9
TF Rep_3362_c_15 Rep_3362_c_15_18 15151 15483 + HTH_5
pfam Rep_3362_c_15 Rep_3362_c_15_19 15422 16153 + DUF1648 | SdpI
TC Rep_3362_c_15 Rep_3362_c_15_20 16303 17016 + 3.A.1.147.6
TC Rep_3362_c_15 Rep_3362_c_15_21 17009 18604 + 3.A.1.147.6
TC Rep_3362_c_15 Rep_3362_c_15_22 18971 20323 + 2.A.40.1.4
TC Rep_3362_c_15 Rep_3362_c_15_23 20448 21869 - 2.A.66.1.33
CAZyme Rep_3362_c_15 Rep_3362_c_15_24 22139 23449 - GH5_13
TC Rep_3362_c_15 Rep_3362_c_15_25 23651 25063 - 2.A.25.1.4
Gene ID: Rep_3362_c_15_15
Type: CAZyme
Location: 10847 - 12289 (-)
Gene ID: Rep_3362_c_15_16
Type: TF
Location: 12363 - 13349 (-)
Gene ID: Rep_3362_c_15_17
Type: TC
Location: 13417 - 14787 (-)
Gene ID: Rep_3362_c_15_18
Type: TF
Location: 15151 - 15483 (+)
Gene ID: Rep_3362_c_15_19
Type: pfam
Location: 15422 - 16153 (+)
Gene ID: Rep_3362_c_15_20
Type: TC
Location: 16303 - 17016 (+)
Gene ID: Rep_3362_c_15_21
Type: TC
Location: 17009 - 18604 (+)
Gene ID: Rep_3362_c_15_22
Type: TC
Location: 18971 - 20323 (+)
Gene ID: Rep_3362_c_15_23
Type: TC
Location: 20448 - 21869 (-)
Gene ID: Rep_3362_c_15_24
Type: CAZyme
Location: 22139 - 23449 (-)
Gene ID: Rep_3362_c_15_25
Type: TC
Location: 23651 - 25063 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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