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Cluster: Rep_3362_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3362_c_89 Rep_3362_c_89_3 2630 5263 + GH136
TF Rep_3362_c_89 Rep_3362_c_89_4 5294 6865 - HTH_AraC | HTH_AraC
TC Rep_3362_c_89 Rep_3362_c_89_5 6865 8655 - 8.A.59.2.1
TC Rep_3362_c_89 Rep_3362_c_89_6 8879 10258 + 3.A.1.1.18
TC Rep_3362_c_89 Rep_3362_c_89_7 10349 11266 + 3.A.1.1.18
TC Rep_3362_c_89 Rep_3362_c_89_8 11263 12117 + 3.A.1.1.18
CAZyme Rep_3362_c_89 Rep_3362_c_89_9 12141 14084 + GH95
Gene ID: Rep_3362_c_89_3
Type: CAZyme
Location: 2630 - 5263 (+)
Gene ID: Rep_3362_c_89_4
Type: TF
Location: 5294 - 6865 (-)
Gene ID: Rep_3362_c_89_5
Type: TC
Location: 6865 - 8655 (-)
Gene ID: Rep_3362_c_89_6
Type: TC
Location: 8879 - 10258 (+)
Gene ID: Rep_3362_c_89_7
Type: TC
Location: 10349 - 11266 (+)
Gene ID: Rep_3362_c_89_8
Type: TC
Location: 11263 - 12117 (+)
Gene ID: Rep_3362_c_89_9
Type: CAZyme
Location: 12141 - 14084 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3362_c_89_6 vegan > omnivore 1.56204 0.02637

🧭 Explore Read Mapping of CGC

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