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Cluster: Rep_3362_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3362_c_82 Rep_3362_c_82_3 2660 4666 + 3.A.1.5.12
TC Rep_3362_c_82 Rep_3362_c_82_4 4817 5803 + 3.A.1.5.29
TC Rep_3362_c_82 Rep_3362_c_82_5 5818 6948 + 3.A.1.5.29
TC Rep_3362_c_82 Rep_3362_c_82_6 6963 7976 + 3.A.1.5.29
TC Rep_3362_c_82 Rep_3362_c_82_7 7976 9025 + 3.A.1.5.29
CAZyme Rep_3362_c_82 Rep_3362_c_82_8 9050 10705 + GH39
NULL(UNKNOWN) Rep_3362_c_82 Rep_3362_c_82_9 10740 11648 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3362_c_82 Rep_3362_c_82_10 11837 12967 + DUF4317
CAZyme Rep_3362_c_82 Rep_3362_c_82_11 13190 13996 + GT51
Gene ID: Rep_3362_c_82_3
Type: TC
Location: 2660 - 4666 (+)
Gene ID: Rep_3362_c_82_4
Type: TC
Location: 4817 - 5803 (+)
Gene ID: Rep_3362_c_82_5
Type: TC
Location: 5818 - 6948 (+)
Gene ID: Rep_3362_c_82_6
Type: TC
Location: 6963 - 7976 (+)
Gene ID: Rep_3362_c_82_7
Type: TC
Location: 7976 - 9025 (+)
Gene ID: Rep_3362_c_82_8
Type: CAZyme
Location: 9050 - 10705 (+)
Gene ID: Rep_3362_c_82_9
Type:
Location: 10740 - 11648 (+)
Gene ID: Rep_3362_c_82_10
Type: pfam
Location: 11837 - 12967 (+)
Gene ID: Rep_3362_c_82_11
Type: CAZyme
Location: 13190 - 13996 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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