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Cluster: Rep_3362_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3362_c_69 Rep_3362_c_69_1 1 618 + 2.A.98.1.4
TF Rep_3362_c_69 Rep_3362_c_69_2 939 1565 + MerR
pfam Rep_3362_c_69 Rep_3362_c_69_3 1768 2481 + TrmO_N | TrmO_C
TC Rep_3362_c_69 Rep_3362_c_69_4 2556 3446 + 2.A.7.2.1
pfam Rep_3362_c_69 Rep_3362_c_69_5 3741 4613 + Hydrolase_3
CAZyme Rep_3362_c_69 Rep_3362_c_69_6 4800 5879 - GH43_17
TF Rep_3362_c_69 Rep_3362_c_69_7 6338 8629 - HTH_AraC | HTH_AraC
TC Rep_3362_c_69 Rep_3362_c_69_8 9555 10496 + 3.A.1.1.10
TC Rep_3362_c_69 Rep_3362_c_69_9 10510 11445 + 3.A.1.1.29
STP Rep_3362_c_69 Rep_3362_c_69_10 11686 13386 + SBP_bac_1
TC Rep_3362_c_69 Rep_3362_c_69_11 14313 16010 + 3.A.1.1.10
Gene ID: Rep_3362_c_69_1
Type: TC
Location: 1 - 618 (+)
Gene ID: Rep_3362_c_69_2
Type: TF
Location: 939 - 1565 (+)
Gene ID: Rep_3362_c_69_3
Type: pfam
Location: 1768 - 2481 (+)
Gene ID: Rep_3362_c_69_4
Type: TC
Location: 2556 - 3446 (+)
Gene ID: Rep_3362_c_69_5
Type: pfam
Location: 3741 - 4613 (+)
Gene ID: Rep_3362_c_69_6
Type: CAZyme
Location: 4800 - 5879 (-)
Gene ID: Rep_3362_c_69_7
Type: TF
Location: 6338 - 8629 (-)
Gene ID: Rep_3362_c_69_8
Type: TC
Location: 9555 - 10496 (+)
Gene ID: Rep_3362_c_69_9
Type: TC
Location: 10510 - 11445 (+)
Gene ID: Rep_3362_c_69_10
Type: STP
Location: 11686 - 13386 (+)
Gene ID: Rep_3362_c_69_11
Type: TC
Location: 14313 - 16010 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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