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Cluster: Rep_3362_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3362_c_38 Rep_3362_c_38_5 6983 8140 + 9.B.141.1.2
pfam Rep_3362_c_38 Rep_3362_c_38_6 8303 8575 - Thioredoxin_3
pfam Rep_3362_c_38 Rep_3362_c_38_7 8648 9250 - SRAP
TC Rep_3362_c_38 Rep_3362_c_38_8 9541 10311 + 9.B.143.2.3
NULL(UNKNOWN) Rep_3362_c_38 Rep_3362_c_38_9 10403 11767 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_3362_c_38 Rep_3362_c_38_10 11745 11954 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3362_c_38 Rep_3362_c_38_11 12269 12919 - GT2
pfam Rep_3362_c_38 Rep_3362_c_38_12 13188 14651 - Collagen | Collagen | Collagen
CAZyme Rep_3362_c_38 Rep_3362_c_38_13 15076 15849 - GT2
STP Rep_3362_c_38 Rep_3362_c_38_14 16306 17274 + Pyr_redox_2
CAZyme Rep_3362_c_38 Rep_3362_c_38_15 17601 19547 - GH127
Gene ID: Rep_3362_c_38_5
Type: TC
Location: 6983 - 8140 (+)
Gene ID: Rep_3362_c_38_6
Type: pfam
Location: 8303 - 8575 (-)
Gene ID: Rep_3362_c_38_7
Type: pfam
Location: 8648 - 9250 (-)
Gene ID: Rep_3362_c_38_8
Type: TC
Location: 9541 - 10311 (+)
Gene ID: Rep_3362_c_38_9
Type:
Location: 10403 - 11767 (+)
Gene ID: Rep_3362_c_38_10
Type:
Location: 11745 - 11954 (+)
Gene ID: Rep_3362_c_38_11
Type: CAZyme
Location: 12269 - 12919 (-)
Gene ID: Rep_3362_c_38_12
Type: pfam
Location: 13188 - 14651 (-)
Gene ID: Rep_3362_c_38_13
Type: CAZyme
Location: 15076 - 15849 (-)
Gene ID: Rep_3362_c_38_14
Type: STP
Location: 16306 - 17274 (+)
Gene ID: Rep_3362_c_38_15
Type: CAZyme
Location: 17601 - 19547 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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