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Cluster: Rep_3355_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3355_c_12 Rep_3355_c_12_16 14819 15787 - GT2
TC Rep_3355_c_12 Rep_3355_c_12_17 15794 16951 - 4.D.2.1.5
peptidase Rep_3355_c_12 Rep_3355_c_12_18 17120 18415 - I04.UPW
CAZyme Rep_3355_c_12 Rep_3355_c_12_19 18412 19782 - GT28
pfam Rep_3355_c_12 Rep_3355_c_12_20 20114 22096 + VanW
TC Rep_3355_c_12 Rep_3355_c_12_21 22247 23254 + 9.A.11.1.1
pfam Rep_3355_c_12 Rep_3355_c_12_22 23378 23902 + PAP2
pfam Rep_3355_c_12 Rep_3355_c_12_23 24190 25329 - DHHW | ALGX
TC Rep_3355_c_12 Rep_3355_c_12_24 25365 26765 - 2.A.50.2.1
Gene ID: Rep_3355_c_12_16
Type: CAZyme
Location: 14819 - 15787 (-)
Gene ID: Rep_3355_c_12_17
Type: TC
Location: 15794 - 16951 (-)
Gene ID: Rep_3355_c_12_18
Type: peptidase
Location: 17120 - 18415 (-)
Gene ID: Rep_3355_c_12_19
Type: CAZyme
Location: 18412 - 19782 (-)
Gene ID: Rep_3355_c_12_20
Type: pfam
Location: 20114 - 22096 (+)
Gene ID: Rep_3355_c_12_21
Type: TC
Location: 22247 - 23254 (+)
Gene ID: Rep_3355_c_12_22
Type: pfam
Location: 23378 - 23902 (+)
Gene ID: Rep_3355_c_12_23
Type: pfam
Location: 24190 - 25329 (-)
Gene ID: Rep_3355_c_12_24
Type: TC
Location: 25365 - 26765 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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