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Cluster: Rep_3355_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3355_c_49 Rep_3355_c_49_4 4519 5247 - 3.A.1.103.1
pfam Rep_3355_c_49 Rep_3355_c_49_5 5281 6099 - ABC2_membrane
CAZyme Rep_3355_c_49 Rep_3355_c_49_6 6310 10143 - GH13_19
NULL(UNKNOWN) Rep_3355_c_49 Rep_3355_c_49_7 10383 11954 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3355_c_49 Rep_3355_c_49_8 11947 12654 - 3.A.1.147.2
pfam Rep_3355_c_49 Rep_3355_c_49_9 12687 13118 - DUF6442
TF Rep_3355_c_49 Rep_3355_c_49_10 13115 13318 - HTH_3
TC Rep_3355_c_49 Rep_3355_c_49_11 13444 14853 - 2.A.66.1.32
TF Rep_3355_c_49 Rep_3355_c_49_12 14979 15515 + PadR
pfam Rep_3355_c_49 Rep_3355_c_49_13 15996 16721 - Epimerase | RmlD_sub_bind
CAZyme Rep_3355_c_49 Rep_3355_c_49_14 16737 18485 - CBM34 | GH13_20
TC Rep_3355_c_49 Rep_3355_c_49_15 18644 20287 - 4.C.1.1.6
Gene ID: Rep_3355_c_49_4
Type: TC
Location: 4519 - 5247 (-)
Gene ID: Rep_3355_c_49_5
Type: pfam
Location: 5281 - 6099 (-)
Gene ID: Rep_3355_c_49_6
Type: CAZyme
Location: 6310 - 10143 (-)
Gene ID: Rep_3355_c_49_7
Type:
Location: 10383 - 11954 (-)
Gene ID: Rep_3355_c_49_8
Type: TC
Location: 11947 - 12654 (-)
Gene ID: Rep_3355_c_49_9
Type: pfam
Location: 12687 - 13118 (-)
Gene ID: Rep_3355_c_49_10
Type: TF
Location: 13115 - 13318 (-)
Gene ID: Rep_3355_c_49_11
Type: TC
Location: 13444 - 14853 (-)
Gene ID: Rep_3355_c_49_12
Type: TF
Location: 14979 - 15515 (+)
Gene ID: Rep_3355_c_49_13
Type: pfam
Location: 15996 - 16721 (-)
Gene ID: Rep_3355_c_49_14
Type: CAZyme
Location: 16737 - 18485 (-)
Gene ID: Rep_3355_c_49_15
Type: TC
Location: 18644 - 20287 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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