Cluster: Rep_3353_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3353
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3353_c_11 | Rep_3353_c_11_15 | 10035 | 10910 | + | 2.A.115.1.5 |
| pfam | Rep_3353_c_11 | Rep_3353_c_11_16 | 11059 | 11355 | + | Ribosomal_S6 |
| TC | Rep_3353_c_11 | Rep_3353_c_11_17 | 11393 | 11842 | + | 3.A.7.19.1 |
| pfam | Rep_3353_c_11 | Rep_3353_c_11_18 | 11890 | 12141 | + | Ribosomal_S18 |
| NULL(UNKNOWN) | Rep_3353_c_11 | Rep_3353_c_11_19 | 12539 | 12838 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3353_c_11 | Rep_3353_c_11_20 | 13163 | 15448 | + | GH13_14 |
| CAZyme | Rep_3353_c_11 | Rep_3353_c_11_21 | 15542 | 18550 | + | GH13_14 |
Gene ID: Rep_3353_c_11_15
Type: TC
Location: 10035 - 10910 (+)
Type: TC
Location: 10035 - 10910 (+)
Gene ID: Rep_3353_c_11_16
Type: pfam
Location: 11059 - 11355 (+)
Type: pfam
Location: 11059 - 11355 (+)
Gene ID: Rep_3353_c_11_17
Type: TC
Location: 11393 - 11842 (+)
Type: TC
Location: 11393 - 11842 (+)
Gene ID: Rep_3353_c_11_18
Type: pfam
Location: 11890 - 12141 (+)
Type: pfam
Location: 11890 - 12141 (+)
Gene ID: Rep_3353_c_11_19
Type:
Location: 12539 - 12838 (-)
Type:
Location: 12539 - 12838 (-)
Gene ID: Rep_3353_c_11_20
Type: CAZyme
Location: 13163 - 15448 (+)
Type: CAZyme
Location: 13163 - 15448 (+)
Gene ID: Rep_3353_c_11_21
Type: CAZyme
Location: 15542 - 18550 (+)
Type: CAZyme
Location: 15542 - 18550 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Scatavimonas
Species
Scatavimonas merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.