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Cluster: Rep_3353_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3353_c_44 Rep_3353_c_44_11 14138 14782 - 2.A.88.3.1
STP Rep_3353_c_44 Rep_3353_c_44_12 15122 15484 + Sigma70_r4
TC Rep_3353_c_44 Rep_3353_c_44_13 15510 16868 + 3.A.5.2.2
pfam Rep_3353_c_44 Rep_3353_c_44_14 16941 17186 + Ribosomal_S16
pfam Rep_3353_c_44 Rep_3353_c_44_15 17206 17439 + KH_KhpA-B
TC Rep_3353_c_44 Rep_3353_c_44_16 17826 19307 + 3.A.1.121.3
pfam Rep_3353_c_44 Rep_3353_c_44_17 19350 19619 - DUF1905
peptidase Rep_3353_c_44 Rep_3353_c_44_18 19669 21072 - M18.UPW
CAZyme Rep_3353_c_44 Rep_3353_c_44_19 21120 21710 - GH23
Gene ID: Rep_3353_c_44_11
Type: TC
Location: 14138 - 14782 (-)
Gene ID: Rep_3353_c_44_12
Type: STP
Location: 15122 - 15484 (+)
Gene ID: Rep_3353_c_44_13
Type: TC
Location: 15510 - 16868 (+)
Gene ID: Rep_3353_c_44_14
Type: pfam
Location: 16941 - 17186 (+)
Gene ID: Rep_3353_c_44_15
Type: pfam
Location: 17206 - 17439 (+)
Gene ID: Rep_3353_c_44_16
Type: TC
Location: 17826 - 19307 (+)
Gene ID: Rep_3353_c_44_17
Type: pfam
Location: 19350 - 19619 (-)
Gene ID: Rep_3353_c_44_18
Type: peptidase
Location: 19669 - 21072 (-)
Gene ID: Rep_3353_c_44_19
Type: CAZyme
Location: 21120 - 21710 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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