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Cluster: Rep_3353_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3353_c_37 Rep_3353_c_37_21 19622 22273 - 3.A.3.2.21
NULL(UNKNOWN) Rep_3353_c_37 Rep_3353_c_37_22 22584 22964 - NULL(UNKNOWN)
[View Structural Homologs]
STP Rep_3353_c_37 Rep_3353_c_37_23 23065 23358 - STAS
TC Rep_3353_c_37 Rep_3353_c_37_24 23589 32576 - 4.C.1.1.6
pfam Rep_3353_c_37 Rep_3353_c_37_25 32597 34315 - MatE | MatE
NULL(UNKNOWN) Rep_3353_c_37 Rep_3353_c_37_26 34853 34957 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3353_c_37 Rep_3353_c_37_27 35241 37241 + CBM48 | GH13_9
pfam Rep_3353_c_37 Rep_3353_c_37_28 37328 38548 + NTP_transferase | Hexapep_GlmU
pfam Rep_3353_c_37 Rep_3353_c_37_29 38545 39669 + NTP_transferase | Hexapep_GlmU
CAZyme Rep_3353_c_37 Rep_3353_c_37_30 39774 41210 + GT5
Gene ID: Rep_3353_c_37_21
Type: TC
Location: 19622 - 22273 (-)
Gene ID: Rep_3353_c_37_22
Type:
Location: 22584 - 22964 (-)
Gene ID: Rep_3353_c_37_23
Type: STP
Location: 23065 - 23358 (-)
Gene ID: Rep_3353_c_37_24
Type: TC
Location: 23589 - 32576 (-)
Gene ID: Rep_3353_c_37_25
Type: pfam
Location: 32597 - 34315 (-)
Gene ID: Rep_3353_c_37_26
Type:
Location: 34853 - 34957 (-)
Gene ID: Rep_3353_c_37_27
Type: CAZyme
Location: 35241 - 37241 (+)
Gene ID: Rep_3353_c_37_28
Type: pfam
Location: 37328 - 38548 (+)
Gene ID: Rep_3353_c_37_29
Type: pfam
Location: 38545 - 39669 (+)
Gene ID: Rep_3353_c_37_30
Type: CAZyme
Location: 39774 - 41210 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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