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Cluster: Rep_3353_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3353_c_26 Rep_3353_c_26_6 5054 5977 - CBM26
TF Rep_3353_c_26 Rep_3353_c_26_7 6263 6688 + MarR
TC Rep_3353_c_26 Rep_3353_c_26_8 6807 8552 + 3.A.1.135.5
TC Rep_3353_c_26 Rep_3353_c_26_9 8542 10449 + 3.A.1.135.5
CAZyme Rep_3353_c_26 Rep_3353_c_26_10 10682 12649 + GH18
pfam Rep_3353_c_26 Rep_3353_c_26_11 12801 14048 + Fe_hyd_lg_C
TC Rep_3353_c_26 Rep_3353_c_26_12 14357 15598 + 1.A.11.5.1
pfam Rep_3353_c_26 Rep_3353_c_26_13 15619 15993 + P-II
TC Rep_3353_c_26 Rep_3353_c_26_14 16344 17699 - 2.A.40.7.6
Gene ID: Rep_3353_c_26_6
Type: CAZyme
Location: 5054 - 5977 (-)
Gene ID: Rep_3353_c_26_7
Type: TF
Location: 6263 - 6688 (+)
Gene ID: Rep_3353_c_26_8
Type: TC
Location: 6807 - 8552 (+)
Gene ID: Rep_3353_c_26_9
Type: TC
Location: 8542 - 10449 (+)
Gene ID: Rep_3353_c_26_10
Type: CAZyme
Location: 10682 - 12649 (+)
Gene ID: Rep_3353_c_26_11
Type: pfam
Location: 12801 - 14048 (+)
Gene ID: Rep_3353_c_26_12
Type: TC
Location: 14357 - 15598 (+)
Gene ID: Rep_3353_c_26_13
Type: pfam
Location: 15619 - 15993 (+)
Gene ID: Rep_3353_c_26_14
Type: TC
Location: 16344 - 17699 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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