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Cluster: Rep_3353_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3353_c_0 Rep_3353_c_0_21 21873 23030 - GT4
NULL(UNKNOWN) Rep_3353_c_0 Rep_3353_c_0_22 23077 24327 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3353_c_0 Rep_3353_c_0_23 24339 25505 - Epimerase_2
CAZyme Rep_3353_c_0 Rep_3353_c_0_24 25552 26289 - GT32
CAZyme Rep_3353_c_0 Rep_3353_c_0_25 26286 27491 - GT4
pfam Rep_3353_c_0 Rep_3353_c_0_26 27513 28055 - Hexapep | Hexapep_2
TC Rep_3353_c_0 Rep_3353_c_0_27 28085 29179 - 9.B.183.1.9
CAZyme Rep_3353_c_0 Rep_3353_c_0_28 29200 30075 - GT2
CAZyme Rep_3353_c_0 Rep_3353_c_0_29 30221 30928 - GT32
Gene ID: Rep_3353_c_0_21
Type: CAZyme
Location: 21873 - 23030 (-)
Gene ID: Rep_3353_c_0_22
Type:
Location: 23077 - 24327 (-)
Gene ID: Rep_3353_c_0_23
Type: pfam
Location: 24339 - 25505 (-)
Gene ID: Rep_3353_c_0_24
Type: CAZyme
Location: 25552 - 26289 (-)
Gene ID: Rep_3353_c_0_25
Type: CAZyme
Location: 26286 - 27491 (-)
Gene ID: Rep_3353_c_0_26
Type: pfam
Location: 27513 - 28055 (-)
Gene ID: Rep_3353_c_0_27
Type: TC
Location: 28085 - 29179 (-)
Gene ID: Rep_3353_c_0_28
Type: CAZyme
Location: 29200 - 30075 (-)
Gene ID: Rep_3353_c_0_29
Type: CAZyme
Location: 30221 - 30928 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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