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Cluster: Rep_3334_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3334_c_1 Rep_3334_c_1_19 16060 16554 - 2.A.87.3.3
pfam Rep_3334_c_1 Rep_3334_c_1_20 16578 16931 - NusG_II
pfam Rep_3334_c_1 Rep_3334_c_1_21 16918 17931 - ApbE
TC Rep_3334_c_1 Rep_3334_c_1_22 17935 18723 - 3.D.6.1.2
TC Rep_3334_c_1 Rep_3334_c_1_23 18821 19402 - 3.D.6.1.2
TC Rep_3334_c_1 Rep_3334_c_1_24 19399 20082 - 3.D.6.1.2
TC Rep_3334_c_1 Rep_3334_c_1_25 20079 20687 - 3.D.6.1.2
TC Rep_3334_c_1 Rep_3334_c_1_26 20684 21631 - 3.D.6.1.2
TC Rep_3334_c_1 Rep_3334_c_1_27 21635 22969 - 3.D.6.1.2
NULL(UNKNOWN) Rep_3334_c_1 Rep_3334_c_1_28 23240 24049 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3334_c_1 Rep_3334_c_1_29 24131 28015 - CE1
Gene ID: Rep_3334_c_1_19
Type: TC
Location: 16060 - 16554 (-)
Gene ID: Rep_3334_c_1_20
Type: pfam
Location: 16578 - 16931 (-)
Gene ID: Rep_3334_c_1_21
Type: pfam
Location: 16918 - 17931 (-)
Gene ID: Rep_3334_c_1_22
Type: TC
Location: 17935 - 18723 (-)
Gene ID: Rep_3334_c_1_23
Type: TC
Location: 18821 - 19402 (-)
Gene ID: Rep_3334_c_1_24
Type: TC
Location: 19399 - 20082 (-)
Gene ID: Rep_3334_c_1_25
Type: TC
Location: 20079 - 20687 (-)
Gene ID: Rep_3334_c_1_26
Type: TC
Location: 20684 - 21631 (-)
Gene ID: Rep_3334_c_1_27
Type: TC
Location: 21635 - 22969 (-)
Gene ID: Rep_3334_c_1_28
Type:
Location: 23240 - 24049 (-)
Gene ID: Rep_3334_c_1_29
Type: CAZyme
Location: 24131 - 28015 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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