dbCAN Logo

Cluster: Rep_3334_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3334_c_20 Rep_3334_c_20_3 4158 4571 - 3.A.2.1.2
TC Rep_3334_c_20 Rep_3334_c_20_4 4611 6014 - 3.A.2.1.5
TC Rep_3334_c_20 Rep_3334_c_20_5 6040 6879 - 3.A.2.1.5
TC Rep_3334_c_20 Rep_3334_c_20_6 6930 8438 - 3.A.2.1.5
pfam Rep_3334_c_20 Rep_3334_c_20_7 8462 9001 - OSCP
pfam Rep_3334_c_20 Rep_3334_c_20_8 8998 9513 - ATP-synt_B
TC Rep_3334_c_20 Rep_3334_c_20_9 9553 9813 - 3.A.2.1.5
TC Rep_3334_c_20 Rep_3334_c_20_10 9860 10603 - 3.A.2.1.5
NULL(UNKNOWN) Rep_3334_c_20 Rep_3334_c_20_11 10606 11058 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3334_c_20 Rep_3334_c_20_12 11381 12685 + GH10
CAZyme Rep_3334_c_20 Rep_3334_c_20_13 12852 14198 + GH10
Gene ID: Rep_3334_c_20_3
Type: TC
Location: 4158 - 4571 (-)
Gene ID: Rep_3334_c_20_4
Type: TC
Location: 4611 - 6014 (-)
Gene ID: Rep_3334_c_20_5
Type: TC
Location: 6040 - 6879 (-)
Gene ID: Rep_3334_c_20_6
Type: TC
Location: 6930 - 8438 (-)
Gene ID: Rep_3334_c_20_7
Type: pfam
Location: 8462 - 9001 (-)
Gene ID: Rep_3334_c_20_8
Type: pfam
Location: 8998 - 9513 (-)
Gene ID: Rep_3334_c_20_9
Type: TC
Location: 9553 - 9813 (-)
Gene ID: Rep_3334_c_20_10
Type: TC
Location: 9860 - 10603 (-)
Gene ID: Rep_3334_c_20_11
Type:
Location: 10606 - 11058 (-)
Gene ID: Rep_3334_c_20_12
Type: CAZyme
Location: 11381 - 12685 (+)
Gene ID: Rep_3334_c_20_13
Type: CAZyme
Location: 12852 - 14198 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List