Cluster: Rep_3321_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3321
- CGC Family ID: CGCFAM_00115
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3321_c_13 | Rep_3321_c_13_35 | 42193 | 44781 | - | 3.A.3.5.15 |
| pfam | Rep_3321_c_13 | Rep_3321_c_13_36 | 44793 | 45098 | - | Trns_repr_metal |
| NULL(UNKNOWN) | Rep_3321_c_13 | Rep_3321_c_13_37 | 45344 | 45601 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3321_c_13 | Rep_3321_c_13_38 | 45737 | 46963 | + | GH25 |
Gene ID: Rep_3321_c_13_35
Type: TC
Location: 42193 - 44781 (-)
Type: TC
Location: 42193 - 44781 (-)
Gene ID: Rep_3321_c_13_36
Type: pfam
Location: 44793 - 45098 (-)
Type: pfam
Location: 44793 - 45098 (-)
Gene ID: Rep_3321_c_13_37
Type:
Location: 45344 - 45601 (+)
Type:
Location: 45344 - 45601 (+)
Gene ID: Rep_3321_c_13_38
Type: CAZyme
Location: 45737 - 46963 (+)
Type: CAZyme
Location: 45737 - 46963 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
Avispirillum
Species
Avispirillum faecium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.