Cluster: Rep_3321_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3321
- CGC Family ID: CGCFAM_02314
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3321_c_12 | Rep_3321_c_12_17 | 20375 | 22159 | + | GH20 |
| TC | Rep_3321_c_12 | Rep_3321_c_12_18 | 22440 | 23126 | - | 3.A.2.2.2 |
| TC | Rep_3321_c_12 | Rep_3321_c_12_19 | 23143 | 24036 | - | 3.A.2.2.2 |
| TC | Rep_3321_c_12 | Rep_3321_c_12_20 | 24011 | 24535 | - | 3.A.2.2.2 |
| TC | Rep_3321_c_12 | Rep_3321_c_12_21 | 24532 | 26310 | - | 3.A.2.2.2 |
Gene ID: Rep_3321_c_12_17
Type: CAZyme
Location: 20375 - 22159 (+)
Type: CAZyme
Location: 20375 - 22159 (+)
Gene ID: Rep_3321_c_12_18
Type: TC
Location: 22440 - 23126 (-)
Type: TC
Location: 22440 - 23126 (-)
Gene ID: Rep_3321_c_12_19
Type: TC
Location: 23143 - 24036 (-)
Type: TC
Location: 23143 - 24036 (-)
Gene ID: Rep_3321_c_12_20
Type: TC
Location: 24011 - 24535 (-)
Type: TC
Location: 24011 - 24535 (-)
Gene ID: Rep_3321_c_12_21
Type: TC
Location: 24532 - 26310 (-)
Type: TC
Location: 24532 - 26310 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
Avispirillum
Species
Avispirillum faecium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.