Cluster: Rep_3321_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3321
- CGC Family ID: CGCFAM_00318
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3321_c_7 | Rep_3321_c_7_38 | 43123 | 44595 | + | GH29 |
| TC | Rep_3321_c_7 | Rep_3321_c_7_39 | 44685 | 45803 | - | 3.A.1.11.8 |
| TC | Rep_3321_c_7 | Rep_3321_c_7_40 | 45831 | 46646 | - | 3.A.1.11.8 |
| TC | Rep_3321_c_7 | Rep_3321_c_7_41 | 46643 | 47506 | - | 3.A.1.11.8 |
| TC | Rep_3321_c_7 | Rep_3321_c_7_42 | 47499 | 48629 | - | 3.A.1.11.8 |
Gene ID: Rep_3321_c_7_38
Type: CAZyme
Location: 43123 - 44595 (+)
Type: CAZyme
Location: 43123 - 44595 (+)
Gene ID: Rep_3321_c_7_39
Type: TC
Location: 44685 - 45803 (-)
Type: TC
Location: 44685 - 45803 (-)
Gene ID: Rep_3321_c_7_40
Type: TC
Location: 45831 - 46646 (-)
Type: TC
Location: 45831 - 46646 (-)
Gene ID: Rep_3321_c_7_41
Type: TC
Location: 46643 - 47506 (-)
Type: TC
Location: 46643 - 47506 (-)
Gene ID: Rep_3321_c_7_42
Type: TC
Location: 47499 - 48629 (-)
Type: TC
Location: 47499 - 48629 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
Avispirillum
Species
Avispirillum faecium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.