Cluster: Rep_3321_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3321
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3321_c_48 | Rep_3321_c_48_6 | 5470 | 6189 | + | GT2 |
| pfam | Rep_3321_c_48 | Rep_3321_c_48_7 | 6190 | 6570 | + | DUF2304 |
| pfam | Rep_3321_c_48 | Rep_3321_c_48_8 | 6536 | 7918 | + | PMT_2 |
| TC | Rep_3321_c_48 | Rep_3321_c_48_9 | 8099 | 8809 | + | 3.A.1.147.2 |
Gene ID: Rep_3321_c_48_6
Type: CAZyme
Location: 5470 - 6189 (+)
Type: CAZyme
Location: 5470 - 6189 (+)
Gene ID: Rep_3321_c_48_7
Type: pfam
Location: 6190 - 6570 (+)
Type: pfam
Location: 6190 - 6570 (+)
Gene ID: Rep_3321_c_48_8
Type: pfam
Location: 6536 - 7918 (+)
Type: pfam
Location: 6536 - 7918 (+)
Gene ID: Rep_3321_c_48_9
Type: TC
Location: 8099 - 8809 (+)
Type: TC
Location: 8099 - 8809 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
Avispirillum
Species
Avispirillum faecium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.