Cluster: Rep_3321_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3321
- CGC Family ID: CGCFAM_08759
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3321_c_45 | Rep_3321_c_45_2 | 1011 | 1883 | - | 3.A.1.1.39 |
| TC | Rep_3321_c_45 | Rep_3321_c_45_3 | 1883 | 2827 | - | 3.A.1.1.11 |
| STP | Rep_3321_c_45 | Rep_3321_c_45_4 | 2907 | 6068 | - | SBP_bac_1 |
| CAZyme | Rep_3321_c_45 | Rep_3321_c_45_5 | 6662 | 7612 | - | CE4 |
| TF | Rep_3321_c_45 | Rep_3321_c_45_6 | 7799 | 8224 | + | Rrf2 |
| pfam | Rep_3321_c_45 | Rep_3321_c_45_7 | 8237 | 10561 | + | Competence |
| CAZyme | Rep_3321_c_45 | Rep_3321_c_45_8 | 10659 | 12923 | + | GH31_16 |
Gene ID: Rep_3321_c_45_2
Type: TC
Location: 1011 - 1883 (-)
Type: TC
Location: 1011 - 1883 (-)
Gene ID: Rep_3321_c_45_3
Type: TC
Location: 1883 - 2827 (-)
Type: TC
Location: 1883 - 2827 (-)
Gene ID: Rep_3321_c_45_4
Type: STP
Location: 2907 - 6068 (-)
Type: STP
Location: 2907 - 6068 (-)
Gene ID: Rep_3321_c_45_5
Type: CAZyme
Location: 6662 - 7612 (-)
Type: CAZyme
Location: 6662 - 7612 (-)
Gene ID: Rep_3321_c_45_6
Type: TF
Location: 7799 - 8224 (+)
Type: TF
Location: 7799 - 8224 (+)
Gene ID: Rep_3321_c_45_7
Type: pfam
Location: 8237 - 10561 (+)
Type: pfam
Location: 8237 - 10561 (+)
Gene ID: Rep_3321_c_45_8
Type: CAZyme
Location: 10659 - 12923 (+)
Type: CAZyme
Location: 10659 - 12923 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
Avispirillum
Species
Avispirillum faecium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.