Cluster: Rep_3321_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3321
- CGC Family ID: CGCFAM_05847
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3321_c_19 | Rep_3321_c_19_3 | 839 | 2239 | - | 3.A.2.1.5 |
| TC | Rep_3321_c_19 | Rep_3321_c_19_4 | 2236 | 3153 | - | 3.A.2.1.5 |
| TC | Rep_3321_c_19 | Rep_3321_c_19_5 | 3169 | 4956 | - | 3.A.2.1.5 |
| pfam | Rep_3321_c_19 | Rep_3321_c_19_6 | 4963 | 5442 | - | ATP-synt_B |
| TC | Rep_3321_c_19 | Rep_3321_c_19_7 | 5458 | 5832 | - | 3.A.2.1.6 |
| pfam | Rep_3321_c_19 | Rep_3321_c_19_8 | 5852 | 6685 | - | ATP-synt_A |
| CAZyme | Rep_3321_c_19 | Rep_3321_c_19_9 | 7064 | 8809 | + | GH2 |
Gene ID: Rep_3321_c_19_3
Type: TC
Location: 839 - 2239 (-)
Type: TC
Location: 839 - 2239 (-)
Gene ID: Rep_3321_c_19_4
Type: TC
Location: 2236 - 3153 (-)
Type: TC
Location: 2236 - 3153 (-)
Gene ID: Rep_3321_c_19_5
Type: TC
Location: 3169 - 4956 (-)
Type: TC
Location: 3169 - 4956 (-)
Gene ID: Rep_3321_c_19_6
Type: pfam
Location: 4963 - 5442 (-)
Type: pfam
Location: 4963 - 5442 (-)
Gene ID: Rep_3321_c_19_7
Type: TC
Location: 5458 - 5832 (-)
Type: TC
Location: 5458 - 5832 (-)
Gene ID: Rep_3321_c_19_8
Type: pfam
Location: 5852 - 6685 (-)
Type: pfam
Location: 5852 - 6685 (-)
Gene ID: Rep_3321_c_19_9
Type: CAZyme
Location: 7064 - 8809 (+)
Type: CAZyme
Location: 7064 - 8809 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
Avispirillum
Species
Avispirillum faecium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.