Cluster: Rep_3321_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3321
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3321_c_0 | Rep_3321_c_0_9 | 9622 | 10536 | - | 3.A.1.105.3 |
| CAZyme | Rep_3321_c_0 | Rep_3321_c_0_10 | 10539 | 12671 | - | GH3 |
| pfam | Rep_3321_c_0 | Rep_3321_c_0_11 | 12738 | 14318 | - | Polysacc_synt |
| TC | Rep_3321_c_0 | Rep_3321_c_0_12 | 14443 | 15852 | - | 2.A.40.1.4 |
| NULL(UNKNOWN) | Rep_3321_c_0 | Rep_3321_c_0_13 | 16004 | 16831 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_3321_c_0 | Rep_3321_c_0_14 | 17332 | 17874 | - | DUF308 | DUF308 | DUF308 |
| TC | Rep_3321_c_0 | Rep_3321_c_0_15 | 17871 | 19703 | - | 3.A.16.1.3 |
Gene ID: Rep_3321_c_0_9
Type: TC
Location: 9622 - 10536 (-)
Type: TC
Location: 9622 - 10536 (-)
Gene ID: Rep_3321_c_0_10
Type: CAZyme
Location: 10539 - 12671 (-)
Type: CAZyme
Location: 10539 - 12671 (-)
Gene ID: Rep_3321_c_0_11
Type: pfam
Location: 12738 - 14318 (-)
Type: pfam
Location: 12738 - 14318 (-)
Gene ID: Rep_3321_c_0_12
Type: TC
Location: 14443 - 15852 (-)
Type: TC
Location: 14443 - 15852 (-)
Gene ID: Rep_3321_c_0_13
Type:
Location: 16004 - 16831 (-)
Type:
Location: 16004 - 16831 (-)
Gene ID: Rep_3321_c_0_14
Type: pfam
Location: 17332 - 17874 (-)
Type: pfam
Location: 17332 - 17874 (-)
Gene ID: Rep_3321_c_0_15
Type: TC
Location: 17871 - 19703 (-)
Type: TC
Location: 17871 - 19703 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
Avispirillum
Species
Avispirillum faecium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.