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Cluster: Rep_3305_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3305_c_6 Rep_3305_c_6_9 8185 9918 - 3.A.1.135.5
TC Rep_3305_c_6 Rep_3305_c_6_10 9915 11111 - 3.A.1.135.7
TC Rep_3305_c_6 Rep_3305_c_6_11 11074 11625 - 3.A.1.135.5
TF Rep_3305_c_6 Rep_3305_c_6_12 11750 12676 + HTH_1
CAZyme Rep_3305_c_6 Rep_3305_c_6_13 12779 14365 - PL2
pfam Rep_3305_c_6 Rep_3305_c_6_14 14459 15250 - AP_endonuc_2
CAZyme Rep_3305_c_6 Rep_3305_c_6_15 15269 16345 - GH179
TC Rep_3305_c_6 Rep_3305_c_6_16 16385 16861 - 1.A.22.1.3
TC Rep_3305_c_6 Rep_3305_c_6_17 17095 18183 + 9.A.23.1.1
CAZyme Rep_3305_c_6 Rep_3305_c_6_18 18398 19483 + GT28
Gene ID: Rep_3305_c_6_9
Type: TC
Location: 8185 - 9918 (-)
Gene ID: Rep_3305_c_6_10
Type: TC
Location: 9915 - 11111 (-)
Gene ID: Rep_3305_c_6_11
Type: TC
Location: 11074 - 11625 (-)
Gene ID: Rep_3305_c_6_12
Type: TF
Location: 11750 - 12676 (+)
Gene ID: Rep_3305_c_6_13
Type: CAZyme
Location: 12779 - 14365 (-)
Gene ID: Rep_3305_c_6_14
Type: pfam
Location: 14459 - 15250 (-)
Gene ID: Rep_3305_c_6_15
Type: CAZyme
Location: 15269 - 16345 (-)
Gene ID: Rep_3305_c_6_16
Type: TC
Location: 16385 - 16861 (-)
Gene ID: Rep_3305_c_6_17
Type: TC
Location: 17095 - 18183 (+)
Gene ID: Rep_3305_c_6_18
Type: CAZyme
Location: 18398 - 19483 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
HGM11327
→
Family
HGM11327
→
Genus
HGM11327
→
Species
HGM11327 sp900759935

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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