Cluster: Rep_3303_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3303
- CGC Family ID: CGCFAM_00559
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3303_c_105 | Rep_3303_c_105_4 | 5338 | 5985 | - | 2.A.38.4.4 |
| TC | Rep_3303_c_105 | Rep_3303_c_105_5 | 6005 | 7348 | - | 2.A.38.4.1 |
| TC | Rep_3303_c_105 | Rep_3303_c_105_6 | 7385 | 8821 | - | 2.A.38.1.1 |
| TC | Rep_3303_c_105 | Rep_3303_c_105_7 | 8821 | 10182 | - | 2.A.38.1.1 |
| pfam | Rep_3303_c_105 | Rep_3303_c_105_8 | 10331 | 11038 | + | DUF2461 |
| CAZyme | Rep_3303_c_105 | Rep_3303_c_105_9 | 11031 | 12080 | + | GT2 |
Gene ID: Rep_3303_c_105_4
Type: TC
Location: 5338 - 5985 (-)
Type: TC
Location: 5338 - 5985 (-)
Gene ID: Rep_3303_c_105_5
Type: TC
Location: 6005 - 7348 (-)
Type: TC
Location: 6005 - 7348 (-)
Gene ID: Rep_3303_c_105_6
Type: TC
Location: 7385 - 8821 (-)
Type: TC
Location: 7385 - 8821 (-)
Gene ID: Rep_3303_c_105_7
Type: TC
Location: 8821 - 10182 (-)
Type: TC
Location: 8821 - 10182 (-)
Gene ID: Rep_3303_c_105_8
Type: pfam
Location: 10331 - 11038 (+)
Type: pfam
Location: 10331 - 11038 (+)
Gene ID: Rep_3303_c_105_9
Type: CAZyme
Location: 11031 - 12080 (+)
Type: CAZyme
Location: 11031 - 12080 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp002320035
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.