Cluster: Rep_3303_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3303
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3303_c_97 | Rep_3303_c_97_16 | 15249 | 17267 | - | GH65 |
| pfam | Rep_3303_c_97 | Rep_3303_c_97_17 | 17264 | 19063 | - | Glyco_hydro_125 |
| TF | Rep_3303_c_97 | Rep_3303_c_97_18 | 19253 | 20272 | + | LacI |
| TC | Rep_3303_c_97 | Rep_3303_c_97_19 | 20418 | 21722 | + | 3.A.1.1.44 |
| TC | Rep_3303_c_97 | Rep_3303_c_97_20 | 21798 | 22724 | + | 3.A.1.1.11 |
| TC | Rep_3303_c_97 | Rep_3303_c_97_21 | 22714 | 23541 | + | 3.A.1.1.39 |
| CAZyme | Rep_3303_c_97 | Rep_3303_c_97_22 | 23541 | 25322 | + | GH31_7 |
Gene ID: Rep_3303_c_97_16
Type: CAZyme
Location: 15249 - 17267 (-)
Type: CAZyme
Location: 15249 - 17267 (-)
Gene ID: Rep_3303_c_97_17
Type: pfam
Location: 17264 - 19063 (-)
Type: pfam
Location: 17264 - 19063 (-)
Gene ID: Rep_3303_c_97_18
Type: TF
Location: 19253 - 20272 (+)
Type: TF
Location: 19253 - 20272 (+)
Gene ID: Rep_3303_c_97_19
Type: TC
Location: 20418 - 21722 (+)
Type: TC
Location: 20418 - 21722 (+)
Gene ID: Rep_3303_c_97_20
Type: TC
Location: 21798 - 22724 (+)
Type: TC
Location: 21798 - 22724 (+)
Gene ID: Rep_3303_c_97_21
Type: TC
Location: 22714 - 23541 (+)
Type: TC
Location: 22714 - 23541 (+)
Gene ID: Rep_3303_c_97_22
Type: CAZyme
Location: 23541 - 25322 (+)
Type: CAZyme
Location: 23541 - 25322 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp002320035
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.