Cluster: Rep_3303_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3303
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3303_c_84 | Rep_3303_c_84_2 | 798 | 2123 | + | GT4 |
| pfam | Rep_3303_c_84 | Rep_3303_c_84_3 | 2150 | 2398 | - | SpoIIID |
| pfam | Rep_3303_c_84 | Rep_3303_c_84_4 | 2550 | 3263 | + | YgjP-like |
| TC | Rep_3303_c_84 | Rep_3303_c_84_5 | 3340 | 4446 | + | 9.A.23.1.1 |
| TC | Rep_3303_c_84 | Rep_3303_c_84_6 | 4498 | 5862 | + | 2.A.66.1.33 |
Gene ID: Rep_3303_c_84_2
Type: CAZyme
Location: 798 - 2123 (+)
Type: CAZyme
Location: 798 - 2123 (+)
Gene ID: Rep_3303_c_84_3
Type: pfam
Location: 2150 - 2398 (-)
Type: pfam
Location: 2150 - 2398 (-)
Gene ID: Rep_3303_c_84_4
Type: pfam
Location: 2550 - 3263 (+)
Type: pfam
Location: 2550 - 3263 (+)
Gene ID: Rep_3303_c_84_5
Type: TC
Location: 3340 - 4446 (+)
Type: TC
Location: 3340 - 4446 (+)
Gene ID: Rep_3303_c_84_6
Type: TC
Location: 4498 - 5862 (+)
Type: TC
Location: 4498 - 5862 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp002320035
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.