Cluster: Rep_3303_CGC5
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3303
- CGC Family ID: CGCFAM_04088
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3303_c_72 | Rep_3303_c_72_10 | 8992 | 9786 | - | 3.D.6.1.2 |
| TC | Rep_3303_c_72 | Rep_3303_c_72_11 | 9802 | 10389 | - | 3.D.6.1.2 |
| TC | Rep_3303_c_72 | Rep_3303_c_72_12 | 10389 | 11081 | - | 3.D.6.1.2 |
| TC | Rep_3303_c_72 | Rep_3303_c_72_13 | 11096 | 11638 | - | 3.D.6.1.3 |
| TC | Rep_3303_c_72 | Rep_3303_c_72_14 | 11635 | 12666 | - | 3.D.6.1.2 |
| TC | Rep_3303_c_72 | Rep_3303_c_72_15 | 12663 | 14015 | - | 3.D.6.1.2 |
| NULL(UNKNOWN) | Rep_3303_c_72 | Rep_3303_c_72_16 | 14444 | 14986 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_3303_c_72 | Rep_3303_c_72_17 | 15131 | 15445 | + | HTH_3 |
| CAZyme | Rep_3303_c_72 | Rep_3303_c_72_18 | 15809 | 17014 | + | GT1 |
Gene ID: Rep_3303_c_72_10
Type: TC
Location: 8992 - 9786 (-)
Type: TC
Location: 8992 - 9786 (-)
Gene ID: Rep_3303_c_72_11
Type: TC
Location: 9802 - 10389 (-)
Type: TC
Location: 9802 - 10389 (-)
Gene ID: Rep_3303_c_72_12
Type: TC
Location: 10389 - 11081 (-)
Type: TC
Location: 10389 - 11081 (-)
Gene ID: Rep_3303_c_72_13
Type: TC
Location: 11096 - 11638 (-)
Type: TC
Location: 11096 - 11638 (-)
Gene ID: Rep_3303_c_72_14
Type: TC
Location: 11635 - 12666 (-)
Type: TC
Location: 11635 - 12666 (-)
Gene ID: Rep_3303_c_72_15
Type: TC
Location: 12663 - 14015 (-)
Type: TC
Location: 12663 - 14015 (-)
Gene ID: Rep_3303_c_72_16
Type:
Location: 14444 - 14986 (-)
Type:
Location: 14444 - 14986 (-)
Gene ID: Rep_3303_c_72_17
Type: TF
Location: 15131 - 15445 (+)
Type: TF
Location: 15131 - 15445 (+)
Gene ID: Rep_3303_c_72_18
Type: CAZyme
Location: 15809 - 17014 (+)
Type: CAZyme
Location: 15809 - 17014 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp002320035
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3303_c_72_10 | vegetarian > omnivore | 1.42278 | 0.00141 |
| Rep_3303_c_72_12 | vegetarian > omnivore | 1.10352 | 0.00141 |
| Rep_3303_c_72_15 | vegetarian > omnivore | 1.73436 | 0.00141 |
| Rep_3303_c_72_15 | vegetarian > vegan | 1.94353 | 0.00454 |