Cluster: Rep_3303_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_3303
- CGC Family ID: CGCFAM_00761
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3303_c_27 | Rep_3303_c_27_19 | 20026 | 22431 | - | GH13_39 |
| CAZyme | Rep_3303_c_27 | Rep_3303_c_27_20 | 22419 | 23897 | - | GT5 |
| CAZyme | Rep_3303_c_27 | Rep_3303_c_27_21 | 24005 | 25960 | - | CBM48 | GH13_9 |
| pfam | Rep_3303_c_27 | Rep_3303_c_27_22 | 26323 | 28932 | - | CBM_X2 |
| TC | Rep_3303_c_27 | Rep_3303_c_27_23 | 29599 | 31590 | + | 3.A.10.1.5 |
Gene ID: Rep_3303_c_27_19
Type: CAZyme
Location: 20026 - 22431 (-)
Type: CAZyme
Location: 20026 - 22431 (-)
Gene ID: Rep_3303_c_27_20
Type: CAZyme
Location: 22419 - 23897 (-)
Type: CAZyme
Location: 22419 - 23897 (-)
Gene ID: Rep_3303_c_27_21
Type: CAZyme
Location: 24005 - 25960 (-)
Type: CAZyme
Location: 24005 - 25960 (-)
Gene ID: Rep_3303_c_27_22
Type: pfam
Location: 26323 - 28932 (-)
Type: pfam
Location: 26323 - 28932 (-)
Gene ID: Rep_3303_c_27_23
Type: TC
Location: 29599 - 31590 (+)
Type: TC
Location: 29599 - 31590 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp002320035
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.