Cluster: Rep_3303_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3303
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3303_c_144 | Rep_3303_c_144_6 | 4805 | 6139 | + | 3.A.1.1.45 |
| TC | Rep_3303_c_144 | Rep_3303_c_144_7 | 6314 | 7228 | + | 3.A.1.1.45 |
| TC | Rep_3303_c_144 | Rep_3303_c_144_8 | 7228 | 8085 | + | 3.A.1.1.45 |
| CAZyme | Rep_3303_c_144 | Rep_3303_c_144_9 | 8133 | 9590 | + | GH77 |
Gene ID: Rep_3303_c_144_6
Type: TC
Location: 4805 - 6139 (+)
Type: TC
Location: 4805 - 6139 (+)
Gene ID: Rep_3303_c_144_7
Type: TC
Location: 6314 - 7228 (+)
Type: TC
Location: 6314 - 7228 (+)
Gene ID: Rep_3303_c_144_8
Type: TC
Location: 7228 - 8085 (+)
Type: TC
Location: 7228 - 8085 (+)
Gene ID: Rep_3303_c_144_9
Type: CAZyme
Location: 8133 - 9590 (+)
Type: CAZyme
Location: 8133 - 9590 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp002320035
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3303_c_144_6 | vegetarian > vegan | 1.32124 | 0.00454 |