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Cluster: Rep_3293_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3293_c_40 Rep_3293_c_40_12 6295 8283 - 3.B.1.1.1
NULL(UNKNOWN) Rep_3293_c_40 Rep_3293_c_40_13 8595 8726 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3293_c_40 Rep_3293_c_40_14 9229 11439 - GT4
pfam Rep_3293_c_40 Rep_3293_c_40_15 11447 11959 - DUF4330
pfam Rep_3293_c_40 Rep_3293_c_40_16 11956 12459 - DUF4330
CAZyme Rep_3293_c_40 Rep_3293_c_40_17 12446 13576 - GT4
TC Rep_3293_c_40 Rep_3293_c_40_18 13573 15021 - 9.B.67.1.1
TC Rep_3293_c_40 Rep_3293_c_40_19 15025 16656 - 2.A.66.4.7
Gene ID: Rep_3293_c_40_12
Type: TC
Location: 6295 - 8283 (-)
Gene ID: Rep_3293_c_40_13
Type:
Location: 8595 - 8726 (-)
Gene ID: Rep_3293_c_40_14
Type: CAZyme
Location: 9229 - 11439 (-)
Gene ID: Rep_3293_c_40_15
Type: pfam
Location: 11447 - 11959 (-)
Gene ID: Rep_3293_c_40_16
Type: pfam
Location: 11956 - 12459 (-)
Gene ID: Rep_3293_c_40_17
Type: CAZyme
Location: 12446 - 13576 (-)
Gene ID: Rep_3293_c_40_18
Type: TC
Location: 13573 - 15021 (-)
Gene ID: Rep_3293_c_40_19
Type: TC
Location: 15025 - 16656 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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