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Cluster: Rep_3293_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3293_c_0 Rep_3293_c_0_39 38305 40401 + CBM48 | GH13_9
pfam Rep_3293_c_0 Rep_3293_c_0_40 40465 41679 + NTP_transferase | Hexapep_GlmU
pfam Rep_3293_c_0 Rep_3293_c_0_41 41676 42788 + NTP_transferase | Hexapep_GlmU
CAZyme Rep_3293_c_0 Rep_3293_c_0_42 42873 44309 + GT5
CAZyme Rep_3293_c_0 Rep_3293_c_0_43 44641 47076 + GT35
pfam Rep_3293_c_0 Rep_3293_c_0_44 47257 47694 + LacAB_rpiB
TC Rep_3293_c_0 Rep_3293_c_0_45 47847 49241 - 2.A.118.1.4
peptidase Rep_3293_c_0 Rep_3293_c_0_46 49282 50415 - M38.UNW
TC Rep_3293_c_0 Rep_3293_c_0_47 50535 51947 - 2.A.118.1.4
Gene ID: Rep_3293_c_0_39
Type: CAZyme
Location: 38305 - 40401 (+)
Gene ID: Rep_3293_c_0_40
Type: pfam
Location: 40465 - 41679 (+)
Gene ID: Rep_3293_c_0_41
Type: pfam
Location: 41676 - 42788 (+)
Gene ID: Rep_3293_c_0_42
Type: CAZyme
Location: 42873 - 44309 (+)
Gene ID: Rep_3293_c_0_43
Type: CAZyme
Location: 44641 - 47076 (+)
Gene ID: Rep_3293_c_0_44
Type: pfam
Location: 47257 - 47694 (+)
Gene ID: Rep_3293_c_0_45
Type: TC
Location: 47847 - 49241 (-)
Gene ID: Rep_3293_c_0_46
Type: peptidase
Location: 49282 - 50415 (-)
Gene ID: Rep_3293_c_0_47
Type: TC
Location: 50535 - 51947 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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