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Cluster: Rep_3284_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3284_c_11 Rep_3284_c_11_18 16653 17207 - 2.A.107.1.2
TC Rep_3284_c_11 Rep_3284_c_11_19 17684 20299 + 3.A.3.2.21
pfam Rep_3284_c_11 Rep_3284_c_11_20 20364 21044 + VTT_dom
pfam Rep_3284_c_11 Rep_3284_c_11_21 21041 22576 + PLDc | PLDc | PLDc_2 | PLDc_2 | PLDc_N
TC Rep_3284_c_11 Rep_3284_c_11_22 22645 23769 + 2.A.86.1.8
CAZyme Rep_3284_c_11 Rep_3284_c_11_23 23766 25301 + GH79
NULL(UNKNOWN) Rep_3284_c_11 Rep_3284_c_11_24 25598 28732 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3284_c_11 Rep_3284_c_11_25 28729 30468 - 1.A.33.1.4
TF Rep_3284_c_11 Rep_3284_c_11_26 30599 31363 - MerR
TC Rep_3284_c_11 Rep_3284_c_11_27 31562 32962 + 2.A.118.1.4
peptidase Rep_3284_c_11 Rep_3284_c_11_28 33092 34225 + M38.UNW
TC Rep_3284_c_11 Rep_3284_c_11_29 34264 35658 + 2.A.118.1.4
Gene ID: Rep_3284_c_11_18
Type: TC
Location: 16653 - 17207 (-)
Gene ID: Rep_3284_c_11_19
Type: TC
Location: 17684 - 20299 (+)
Gene ID: Rep_3284_c_11_20
Type: pfam
Location: 20364 - 21044 (+)
Gene ID: Rep_3284_c_11_21
Type: pfam
Location: 21041 - 22576 (+)
Gene ID: Rep_3284_c_11_22
Type: TC
Location: 22645 - 23769 (+)
Gene ID: Rep_3284_c_11_23
Type: CAZyme
Location: 23766 - 25301 (+)
Gene ID: Rep_3284_c_11_24
Type:
Location: 25598 - 28732 (-)
Gene ID: Rep_3284_c_11_25
Type: TC
Location: 28729 - 30468 (-)
Gene ID: Rep_3284_c_11_26
Type: TF
Location: 30599 - 31363 (-)
Gene ID: Rep_3284_c_11_27
Type: TC
Location: 31562 - 32962 (+)
Gene ID: Rep_3284_c_11_28
Type: peptidase
Location: 33092 - 34225 (+)
Gene ID: Rep_3284_c_11_29
Type: TC
Location: 34264 - 35658 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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