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Cluster: Rep_3284_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3284_c_5 Rep_3284_c_5_1 39 905 - 3.A.1.3.27
TF Rep_3284_c_5 Rep_3284_c_5_2 1577 2446 - HTH_6
pfam Rep_3284_c_5 Rep_3284_c_5_3 2915 4294 + ROK
CAZyme Rep_3284_c_5 Rep_3284_c_5_4 4297 5412 + CE9
pfam Rep_3284_c_5 Rep_3284_c_5_5 5428 6147 + Glucosamine_iso
pfam Rep_3284_c_5 Rep_3284_c_5_6 6291 7139 + CarboxypepD_reg | CarboxypepD_reg | SpaA | SpaA
TC Rep_3284_c_5 Rep_3284_c_5_7 7566 8255 - 3.A.2.2.2
TC Rep_3284_c_5 Rep_3284_c_5_8 8268 9644 - 3.A.2.2.2
TC Rep_3284_c_5 Rep_3284_c_5_9 9641 11413 - 3.A.2.2.2
TC Rep_3284_c_5 Rep_3284_c_5_10 11673 11981 - 3.A.2.2.2
pfam Rep_3284_c_5 Rep_3284_c_5_11 11997 12995 - vATP-synt_AC39
pfam Rep_3284_c_5 Rep_3284_c_5_12 13013 13702 - vATP-synt_E
TC Rep_3284_c_5 Rep_3284_c_5_13 13721 14245 - 3.A.2.2.2
TC Rep_3284_c_5 Rep_3284_c_5_14 14261 16213 - 3.A.2.2.2
Gene ID: Rep_3284_c_5_1
Type: TC
Location: 39 - 905 (-)
Gene ID: Rep_3284_c_5_2
Type: TF
Location: 1577 - 2446 (-)
Gene ID: Rep_3284_c_5_3
Type: pfam
Location: 2915 - 4294 (+)
Gene ID: Rep_3284_c_5_4
Type: CAZyme
Location: 4297 - 5412 (+)
Gene ID: Rep_3284_c_5_5
Type: pfam
Location: 5428 - 6147 (+)
Gene ID: Rep_3284_c_5_6
Type: pfam
Location: 6291 - 7139 (+)
Gene ID: Rep_3284_c_5_7
Type: TC
Location: 7566 - 8255 (-)
Gene ID: Rep_3284_c_5_8
Type: TC
Location: 8268 - 9644 (-)
Gene ID: Rep_3284_c_5_9
Type: TC
Location: 9641 - 11413 (-)
Gene ID: Rep_3284_c_5_10
Type: TC
Location: 11673 - 11981 (-)
Gene ID: Rep_3284_c_5_11
Type: pfam
Location: 11997 - 12995 (-)
Gene ID: Rep_3284_c_5_12
Type: pfam
Location: 13013 - 13702 (-)
Gene ID: Rep_3284_c_5_13
Type: TC
Location: 13721 - 14245 (-)
Gene ID: Rep_3284_c_5_14
Type: TC
Location: 14261 - 16213 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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