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Cluster: Rep_3277_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3277_c_4 Rep_3277_c_4_163 176283 177758 - GH77
NULL(UNKNOWN) Rep_3277_c_4 Rep_3277_c_4_164 177915 178169 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3277_c_4 Rep_3277_c_4_165 178236 178760 - DUF4358
TC Rep_3277_c_4 Rep_3277_c_4_166 178757 181189 - 3.A.9.1.2
NULL(UNKNOWN) Rep_3277_c_4 Rep_3277_c_4_167 181258 181440 - NULL(UNKNOWN)
[View Structural Homologs]
STP Rep_3277_c_4 Rep_3277_c_4_168 181599 181769 + Fer4 | Fer4
TC Rep_3277_c_4 Rep_3277_c_4_169 181883 183220 - 2.A.8.1.13
Gene ID: Rep_3277_c_4_163
Type: CAZyme
Location: 176283 - 177758 (-)
Gene ID: Rep_3277_c_4_164
Type:
Location: 177915 - 178169 (+)
Gene ID: Rep_3277_c_4_165
Type: pfam
Location: 178236 - 178760 (-)
Gene ID: Rep_3277_c_4_166
Type: TC
Location: 178757 - 181189 (-)
Gene ID: Rep_3277_c_4_167
Type:
Location: 181258 - 181440 (-)
Gene ID: Rep_3277_c_4_168
Type: STP
Location: 181599 - 181769 (+)
Gene ID: Rep_3277_c_4_169
Type: TC
Location: 181883 - 183220 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3277_c_4_165 vegetarian > vegan 1.01248 0.01057

🧭 Explore Read Mapping of CGC

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