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Cluster: Rep_3277_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3277_c_18 Rep_3277_c_18_4 3784 4467 + 9.B.18.1.3
CAZyme Rep_3277_c_18 Rep_3277_c_18_5 4464 5552 + GT4
pfam Rep_3277_c_18 Rep_3277_c_18_6 5549 6661 + EpsG
CAZyme Rep_3277_c_18 Rep_3277_c_18_7 6675 7652 + GT2
CAZyme Rep_3277_c_18 Rep_3277_c_18_8 7660 8577 + GT2
pfam Rep_3277_c_18 Rep_3277_c_18_9 8574 9557 + DUF6625
CAZyme Rep_3277_c_18 Rep_3277_c_18_10 9557 10621 + GT2
CAZyme Rep_3277_c_18 Rep_3277_c_18_11 10638 11753 + GT4
pfam Rep_3277_c_18 Rep_3277_c_18_12 11750 12292 + Hexapep | Hexapep_2
CAZyme Rep_3277_c_18 Rep_3277_c_18_13 12292 13278 + GT2
CAZyme Rep_3277_c_18 Rep_3277_c_18_14 13367 14251 + GT2
CAZyme Rep_3277_c_18 Rep_3277_c_18_15 14263 15414 + GT4
Gene ID: Rep_3277_c_18_4
Type: TC
Location: 3784 - 4467 (+)
Gene ID: Rep_3277_c_18_5
Type: CAZyme
Location: 4464 - 5552 (+)
Gene ID: Rep_3277_c_18_6
Type: pfam
Location: 5549 - 6661 (+)
Gene ID: Rep_3277_c_18_7
Type: CAZyme
Location: 6675 - 7652 (+)
Gene ID: Rep_3277_c_18_8
Type: CAZyme
Location: 7660 - 8577 (+)
Gene ID: Rep_3277_c_18_9
Type: pfam
Location: 8574 - 9557 (+)
Gene ID: Rep_3277_c_18_10
Type: CAZyme
Location: 9557 - 10621 (+)
Gene ID: Rep_3277_c_18_11
Type: CAZyme
Location: 10638 - 11753 (+)
Gene ID: Rep_3277_c_18_12
Type: pfam
Location: 11750 - 12292 (+)
Gene ID: Rep_3277_c_18_13
Type: CAZyme
Location: 12292 - 13278 (+)
Gene ID: Rep_3277_c_18_14
Type: CAZyme
Location: 13367 - 14251 (+)
Gene ID: Rep_3277_c_18_15
Type: CAZyme
Location: 14263 - 15414 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3277_c_18_5 vegetarian > vegan 1.95329 0.01057

🧭 Explore Read Mapping of CGC

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