dbCAN Logo

Cluster: Rep_3277_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3277_c_10 Rep_3277_c_10_20 20516 25693 - GH20
pfam Rep_3277_c_10 Rep_3277_c_10_21 26165 28480 + SLH | SLH
TC Rep_3277_c_10 Rep_3277_c_10_22 28605 30059 - 2.A.35.1.1
CAZyme Rep_3277_c_10 Rep_3277_c_10_23 30228 30830 - CBM50
NULL(UNKNOWN) Rep_3277_c_10 Rep_3277_c_10_24 30950 31177 - NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_3277_c_10 Rep_3277_c_10_25 31485 32165 + Trans_reg_C
TC Rep_3277_c_10 Rep_3277_c_10_26 32162 33406 + 2.A.21.9.2
TC Rep_3277_c_10 Rep_3277_c_10_27 33485 35395 + 9.B.18.2.1
Gene ID: Rep_3277_c_10_20
Type: CAZyme
Location: 20516 - 25693 (-)
Gene ID: Rep_3277_c_10_21
Type: pfam
Location: 26165 - 28480 (+)
Gene ID: Rep_3277_c_10_22
Type: TC
Location: 28605 - 30059 (-)
Gene ID: Rep_3277_c_10_23
Type: CAZyme
Location: 30228 - 30830 (-)
Gene ID: Rep_3277_c_10_24
Type:
Location: 30950 - 31177 (-)
Gene ID: Rep_3277_c_10_25
Type: TF
Location: 31485 - 32165 (+)
Gene ID: Rep_3277_c_10_26
Type: TC
Location: 32162 - 33406 (+)
Gene ID: Rep_3277_c_10_27
Type: TC
Location: 33485 - 35395 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List