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Cluster: Rep_3277_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3277_c_0 Rep_3277_c_0_46 51871 52479 - 2.A.107.1.1
pfam Rep_3277_c_0 Rep_3277_c_0_47 52572 53045 + dCMP_cyt_deam_1 | MafB19-deam
TC Rep_3277_c_0 Rep_3277_c_0_48 53372 54616 - 2.A.1.59.4
TF Rep_3277_c_0 Rep_3277_c_0_49 54606 55082 - MarR
TC Rep_3277_c_0 Rep_3277_c_0_50 55358 56353 - 3.A.1.2.12
pfam Rep_3277_c_0 Rep_3277_c_0_51 56350 57441 - BPD_transp_2
TC Rep_3277_c_0 Rep_3277_c_0_52 57442 58977 - 3.A.1.2.17
pfam Rep_3277_c_0 Rep_3277_c_0_53 59147 60424 - Bmp
STP Rep_3277_c_0 Rep_3277_c_0_54 60639 61211 - Pribosyltran
CAZyme Rep_3277_c_0 Rep_3277_c_0_55 61533 63215 + GH18
Gene ID: Rep_3277_c_0_46
Type: TC
Location: 51871 - 52479 (-)
Gene ID: Rep_3277_c_0_47
Type: pfam
Location: 52572 - 53045 (+)
Gene ID: Rep_3277_c_0_48
Type: TC
Location: 53372 - 54616 (-)
Gene ID: Rep_3277_c_0_49
Type: TF
Location: 54606 - 55082 (-)
Gene ID: Rep_3277_c_0_50
Type: TC
Location: 55358 - 56353 (-)
Gene ID: Rep_3277_c_0_51
Type: pfam
Location: 56350 - 57441 (-)
Gene ID: Rep_3277_c_0_52
Type: TC
Location: 57442 - 58977 (-)
Gene ID: Rep_3277_c_0_53
Type: pfam
Location: 59147 - 60424 (-)
Gene ID: Rep_3277_c_0_54
Type: STP
Location: 60639 - 61211 (-)
Gene ID: Rep_3277_c_0_55
Type: CAZyme
Location: 61533 - 63215 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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