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Cluster: Rep_3271_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3271_c_8 Rep_3271_c_8_25 37055 39349 - CBM40 | GH33
pfam Rep_3271_c_8 Rep_3271_c_8_26 39400 40506 - GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
TC Rep_3271_c_8 Rep_3271_c_8_27 40534 41379 - 3.A.1.1.25
TC Rep_3271_c_8 Rep_3271_c_8_28 41379 42272 - 3.A.1.1.7
TC Rep_3271_c_8 Rep_3271_c_8_29 42357 43754 - 3.A.1.1.17
TF Rep_3271_c_8 Rep_3271_c_8_30 43898 44776 - HTH_AraC | HTH_AraC
CAZyme Rep_3271_c_8 Rep_3271_c_8_31 44914 45855 + CE7
Gene ID: Rep_3271_c_8_25
Type: CAZyme
Location: 37055 - 39349 (-)
Gene ID: Rep_3271_c_8_26
Type: pfam
Location: 39400 - 40506 (-)
Gene ID: Rep_3271_c_8_27
Type: TC
Location: 40534 - 41379 (-)
Gene ID: Rep_3271_c_8_28
Type: TC
Location: 41379 - 42272 (-)
Gene ID: Rep_3271_c_8_29
Type: TC
Location: 42357 - 43754 (-)
Gene ID: Rep_3271_c_8_30
Type: TF
Location: 43898 - 44776 (-)
Gene ID: Rep_3271_c_8_31
Type: CAZyme
Location: 44914 - 45855 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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