Cluster: Rep_3271_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3271
- CGC Family ID: CGCFAM_06029
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3271_c_4 | Rep_3271_c_4_65 | 80076 | 83876 | + | GH3 |
| pfam | Rep_3271_c_4 | Rep_3271_c_4_66 | 83982 | 85376 | + | Big_3 | Flg_new | Flg_new |
| CAZyme | Rep_3271_c_4 | Rep_3271_c_4_67 | 85390 | 88275 | + | GH3 |
| TC | Rep_3271_c_4 | Rep_3271_c_4_68 | 88631 | 89536 | + | 3.A.1.2.18 |
Gene ID: Rep_3271_c_4_65
Type: CAZyme
Location: 80076 - 83876 (+)
Type: CAZyme
Location: 80076 - 83876 (+)
Gene ID: Rep_3271_c_4_66
Type: pfam
Location: 83982 - 85376 (+)
Type: pfam
Location: 83982 - 85376 (+)
Gene ID: Rep_3271_c_4_67
Type: CAZyme
Location: 85390 - 88275 (+)
Type: CAZyme
Location: 85390 - 88275 (+)
Gene ID: Rep_3271_c_4_68
Type: TC
Location: 88631 - 89536 (+)
Type: TC
Location: 88631 - 89536 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoflavonifractor
Species
Pseudoflavonifractor faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.