Cluster: Rep_3271_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3271
- CGC Family ID: CGCFAM_00887
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3271_c_4 | Rep_3271_c_4_51 | 59853 | 61607 | - | 8.A.59.2.1 |
| STP | Rep_3271_c_4 | Rep_3271_c_4_52 | 61810 | 63120 | + | SBP_bac_1 |
| TC | Rep_3271_c_4 | Rep_3271_c_4_53 | 63229 | 64077 | + | 3.A.1.1.42 |
| TC | Rep_3271_c_4 | Rep_3271_c_4_54 | 64074 | 64907 | + | 3.A.1.1.36 |
| CAZyme | Rep_3271_c_4 | Rep_3271_c_4_55 | 64920 | 67082 | + | GH36 |
Gene ID: Rep_3271_c_4_51
Type: TC
Location: 59853 - 61607 (-)
Type: TC
Location: 59853 - 61607 (-)
Gene ID: Rep_3271_c_4_52
Type: STP
Location: 61810 - 63120 (+)
Type: STP
Location: 61810 - 63120 (+)
Gene ID: Rep_3271_c_4_53
Type: TC
Location: 63229 - 64077 (+)
Type: TC
Location: 63229 - 64077 (+)
Gene ID: Rep_3271_c_4_54
Type: TC
Location: 64074 - 64907 (+)
Type: TC
Location: 64074 - 64907 (+)
Gene ID: Rep_3271_c_4_55
Type: CAZyme
Location: 64920 - 67082 (+)
Type: CAZyme
Location: 64920 - 67082 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoflavonifractor
Species
Pseudoflavonifractor faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.