Cluster: Rep_3271_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_3271
- CGC Family ID: CGCFAM_00233
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3271_c_4 | Rep_3271_c_4_35 | 38389 | 39864 | - | 2.A.1.42.2 |
| pfam | Rep_3271_c_4 | Rep_3271_c_4_36 | 40068 | 41429 | + | HATPase_c_5 |
| TF | Rep_3271_c_4 | Rep_3271_c_4_37 | 41426 | 42148 | + | LytTR |
| CAZyme | Rep_3271_c_4 | Rep_3271_c_4_38 | 42392 | 44920 | + | GH3 |
| CAZyme | Rep_3271_c_4 | Rep_3271_c_4_39 | 44996 | 47530 | + | GH3 |
| CAZyme | Rep_3271_c_4 | Rep_3271_c_4_40 | 47616 | 50672 | + | GH3 |
Gene ID: Rep_3271_c_4_35
Type: TC
Location: 38389 - 39864 (-)
Type: TC
Location: 38389 - 39864 (-)
Gene ID: Rep_3271_c_4_36
Type: pfam
Location: 40068 - 41429 (+)
Type: pfam
Location: 40068 - 41429 (+)
Gene ID: Rep_3271_c_4_37
Type: TF
Location: 41426 - 42148 (+)
Type: TF
Location: 41426 - 42148 (+)
Gene ID: Rep_3271_c_4_38
Type: CAZyme
Location: 42392 - 44920 (+)
Type: CAZyme
Location: 42392 - 44920 (+)
Gene ID: Rep_3271_c_4_39
Type: CAZyme
Location: 44996 - 47530 (+)
Type: CAZyme
Location: 44996 - 47530 (+)
Gene ID: Rep_3271_c_4_40
Type: CAZyme
Location: 47616 - 50672 (+)
Type: CAZyme
Location: 47616 - 50672 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoflavonifractor
Species
Pseudoflavonifractor faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.