Cluster: Rep_3271_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3271
- CGC Family ID: CGCFAM_02056
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3271_c_4 | Rep_3271_c_4_15 | 13179 | 13502 | + | 4.A.3.2.9 |
| TC | Rep_3271_c_4 | Rep_3271_c_4_16 | 13522 | 14808 | + | 4.A.3.2.8 |
| pfam | Rep_3271_c_4 | Rep_3271_c_4_17 | 14845 | 15492 | + | RDD |
| CAZyme | Rep_3271_c_4 | Rep_3271_c_4_18 | 15489 | 16811 | + | GH4 |
| CAZyme | Rep_3271_c_4 | Rep_3271_c_4_19 | 16831 | 17937 | + | GH170 |
Gene ID: Rep_3271_c_4_15
Type: TC
Location: 13179 - 13502 (+)
Type: TC
Location: 13179 - 13502 (+)
Gene ID: Rep_3271_c_4_16
Type: TC
Location: 13522 - 14808 (+)
Type: TC
Location: 13522 - 14808 (+)
Gene ID: Rep_3271_c_4_17
Type: pfam
Location: 14845 - 15492 (+)
Type: pfam
Location: 14845 - 15492 (+)
Gene ID: Rep_3271_c_4_18
Type: CAZyme
Location: 15489 - 16811 (+)
Type: CAZyme
Location: 15489 - 16811 (+)
Gene ID: Rep_3271_c_4_19
Type: CAZyme
Location: 16831 - 17937 (+)
Type: CAZyme
Location: 16831 - 17937 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoflavonifractor
Species
Pseudoflavonifractor faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.