Cluster: Rep_3271_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3271
- CGC Family ID: CGCFAM_00455
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3271_c_3 | Rep_3271_c_3_24 | 21945 | 23300 | - | 3.A.5.2.2 |
| STP | Rep_3271_c_3 | Rep_3271_c_3_25 | 23304 | 23672 | - | Sigma70_r4 |
| CAZyme | Rep_3271_c_3 | Rep_3271_c_3_26 | 23853 | 31376 | + | GH94 | GT84 |
| TC | Rep_3271_c_3 | Rep_3271_c_3_27 | 31355 | 32137 | - | 1.A.16.3.3 |
Gene ID: Rep_3271_c_3_24
Type: TC
Location: 21945 - 23300 (-)
Type: TC
Location: 21945 - 23300 (-)
Gene ID: Rep_3271_c_3_25
Type: STP
Location: 23304 - 23672 (-)
Type: STP
Location: 23304 - 23672 (-)
Gene ID: Rep_3271_c_3_26
Type: CAZyme
Location: 23853 - 31376 (+)
Type: CAZyme
Location: 23853 - 31376 (+)
Gene ID: Rep_3271_c_3_27
Type: TC
Location: 31355 - 32137 (-)
Type: TC
Location: 31355 - 32137 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoflavonifractor
Species
Pseudoflavonifractor faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.