Cluster: Rep_3271_CGC29
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3271
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3271_c_88 | Rep_3271_c_88_3 | 2538 | 3428 | + | 3.A.1.1.37 |
| TC | Rep_3271_c_88 | Rep_3271_c_88_4 | 3443 | 4273 | + | 3.A.1.1.6 |
| CAZyme | Rep_3271_c_88 | Rep_3271_c_88_5 | 4391 | 11161 | + | CBM66 | GH2 |
Gene ID: Rep_3271_c_88_3
Type: TC
Location: 2538 - 3428 (+)
Type: TC
Location: 2538 - 3428 (+)
Gene ID: Rep_3271_c_88_4
Type: TC
Location: 3443 - 4273 (+)
Type: TC
Location: 3443 - 4273 (+)
Gene ID: Rep_3271_c_88_5
Type: CAZyme
Location: 4391 - 11161 (+)
Type: CAZyme
Location: 4391 - 11161 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoflavonifractor
Species
Pseudoflavonifractor faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3271_c_88_4 | vegetarian > vegan | 1.49697 | 0.01882 |